News highlights

News from the transPLANT project and partners. See also the transPLANT newsletter.

variation archive

Store, accession and update plant variation data. Now accepting submissions.

Training resources

A collection of training resources from transPLANT related events. Browse the materials.

Registration now closed!

The 3rd transPLANT user training workshop will be held in Wageningen, the Netherlands on October 13-14, 2014, focused on the latest developments in the key plant data resources in Europe and how to use them with a special reference to Solanaceae genomes, especially tomato and potato.

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Relevant publications

Knowledge found in biomedical databases, in particular in Web information systems, is a major bioinformatics resource. In general, this biological knowledge is worldwide represented in a network of databases.

Population structure causes genome-wide linkage disequilibrium between unlinked loci, leading to statistical confounding in genome-wide association studies.

Ensembl Genomes (http://www.ensemblgenomes.org) is an integrative resource for genome-scale data from non-vertebrate species.

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Get results from ten different plant genomics databases in a single click.
Try a sample search...

variation archive

Store, accession and update plant variation data. Now accepting submissions.

Training resources

A collection of training resources from transPLANT related events. Browse the materials.

Search for genomic resources for plant species of agricultural and scientific importance. Try a sample search...

transPLANT

is a European-Union funded e-infrstructure to support computational analysis of genomic data from crop and model plants. The project funds coordination and research activities; and provides free access to tools, training and data standards.

You can use this site to:

For more information contact us or join to the mailing list.

Training

transPLANT is running a series of training courses across Europe. The next one will be held at EMBL-EBI, Hinton, UK, 1st-3rd July, 2015. When registration is opened, details will be posted here.

  • You can access material from the previous transPLANT training courses here.
  • We are developing a series of videos, guiding users through some of the most interesting and complex data sets available for plants. View the first video, focused on resources for the barley genome, here.

Standards

The development and adoption of data standards is vital to the interoperability of data. transPLANT is currently pursuing the development of standards for plant phenotyping data, in collaboration with other interested groups. Visit our Phenotype standardisation portal to see the latest proposals and get involved.