News highlights

News from the transPLANT project and partners. See also the transPLANT newsletter.

The results of a new survey of bioinformatics stakeholders' needs in the field of agronomic research are now available.

Search for genomic resources for plant species of agricultural and scientific importance. Try a sample search...

Genome-scale resequencing is now widespread in plants, to identify variation in natural populations and crop stocks. The transPLANT variation archive has been developed to provide a system for the persistent storage and analysis of variation data from plant species.

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Relevant publications

Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide.

Recent developments in DNA sequencing have enabled the large and complex genomes of many crop species to be determined for the first time, even those previously intractable due to their polyploid nature.

Recent methodological developments in plant phenotyping, as well as the growing importance of its applications in plant science and breeding, are resulting in a fast accumulation of multidimensional data.

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Get results from ten different plant genomics databases in a single click.
Try a sample search...

variation archive

Store, accession and update plant variation data. Now accepting submissions.

Training resources

A collection of training resources from transPLANT related events. Browse the materials.

Search for genomic resources for plant species of agricultural and scientific importance. Try a sample search...

transPLANT

is a European-Union funded e-infrstructure to support computational analysis of genomic data from crop and model plants. The project funds coordination and research activities; and provides free access to tools, training and data standards.

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Training

transPLANT is running a series of training courses across Europe. The next one will be held at EMBL-EBI, Hinton, UK, 1st-3rd July, 2015. When registration is opened, details will be posted here.

  • You can access material from the previous transPLANT training courses here.
  • We are developing a series of videos, guiding users through some of the most interesting and complex data sets available for plants. View the first video, focused on resources for the barley genome, here.

Standards

The development and adoption of data standards is vital to the interoperability of data. transPLANT is currently pursuing the development of standards for plant phenotyping data, in collaboration with other interested groups. Visit our Phenotype standardisation portal to see the latest proposals and get involved.