News highlights

News from the transPLANT project and partners. See also the transPLANT newsletter.

The Ensembl Genomes Project, including Ensembl Plants, is pleased to announce release 18 of Ensembl Genomes.

Registration now closed!

We are pleased to announce the 2nd transPLANT user training workshop to be held in Poznań, Poland, 27-28 June 2013. The workshop focuses on plant genomics resources with special reference to Triticeae and topics related to standardisation and annotation of plant phenotypic data. We target experimental biologists and plant breeders; no prior informatics training is assumed.

Registration now closed!

A Meeting on "Genomes to Germplasm" will be held in INRA, Versailles, France from 28th February - 2nd March 2013.

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Relevant publications

The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B, and D), but a clear understanding of their phylogenetic history has been lacking.

Information Retrieval (IR) plays a central role in the exploration and interpretation of integrated biological datasets that represent the heterogeneous ecosystem of life sciences. Here, keyword based query systems are popular user interfaces.

The life-science community faces a major challenge in handling "big data", highlighting the need for high quality infrastructures capable of sharing and publishing research data. Data preservation, analysis, and publication are the three pillars in the "big data life cycle".

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Get results from ten different plant genomics databases in a single click.
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variation archive

Store, accession and update plant variation data. Now accepting submissions.

Training resources

A collection of training resources from transPLANT related events. Browse the materials.

Search for genomic resources for plant species of agricultural and scientific importance. Try a sample search...

transPLANT

is a European-Union funded e-infrstructure to support computational analysis of genomic data from crop and model plants. The project funds coordination and research activities; and provides free access to tools, training and data standards.

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For more information contact us or join to the mailing list.

Training

transPLANT is running a series of training courses across Europe. The next one will be held at EMBL-EBI, Hinton, UK, 1st-3rd July, 2015. When registration is opened, details will be posted here.

  • You can access material from the previous transPLANT training courses here.
  • We are developing a series of videos, guiding users through some of the most interesting and complex data sets available for plants. View the first video, focused on resources for the barley genome, here.

Standards

The development and adoption of data standards is vital to the interoperability of data. transPLANT is currently pursuing the development of standards for plant phenotyping data, in collaboration with other interested groups. Visit our Phenotype standardisation portal to see the latest proposals and get involved.